Brainiac's Ship is an interstellar warship commanded by Brainiac.
- On the right side of The Bridge, a transition can be performed that will send the opponent crashing through Brainiac's ship into space. One of the tentacles of his ship is bringing them back into Collection Room.
- On the left side of the Collection Room, a transition can be performed that will send the opponent flying. He/she got attacked a tentacle and brought it up to The Bridge.
At the end of Multiverse Ladders, you face Brainiac's on Brainiac's Ship. The villain gets extra moves, such as having tentacles come out of the ground.